The Virtual Brain NODE#8 Workshop

Lisa Otten | Project Managerlisa.otten@univ-amu.fr

Get up to speed about the fundamental principles of full brain network modeling using the open-source neuroinformatics platform <A TITLE="Visit the TVB website..." HREF="http://www.thevirtualbrain.org" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">The Virtual Brain</A> (TVB).
<A HREF="http://thevirtualbrain.org/tvb" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer"><IMG STYLE="display: block; margin-left: auto; margin-right: auto;" ALT="" SRC="https://evbdn.eventbrite.com/s3-s3/eventlogos/50084740/tvbtaglinecrop.jpg" HEIGHT="143" WIDTH="195"></IMG></A>
TVB enables biologically realistic modeling of network dynamics using Connectome-based approaches across different brain scales.
Generate macroscopic neuroimaging signals including fMRI, intracranial and stereotactic EEG, surface EEG and MEG for single subjects.
Researchers from different backgrounds can benefit from an integrative software platform including a supporting framework for data management (generation, organization, storage, integration and sharing) and a simulation core written in Python.
The architecture of TVB supports interaction with MATLAB packages, e.g. the well-known Brain Connectivity Toolbox. 
<HR>
 Simulated brains. Real memories. 
The workshop has been strategically scheduled to take place preceding <A TITLE="NeuroFrance 2019" HREF="https://www.neurosciences.asso.fr/V2/colloques/SN19/index_en.php" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">NeuroFrance 2019</A> that will take place May 22-24, also in Marseille.
In the workshop we will explain the fundamental principles of full brain network modeling using the open source neuroinformatics platform The Virtual Brain (TVB). This simulation environment enables the biologically realistic modeling of network dynamics using connectome-based approaches across different brain scales. Configurable brain network models generate macroscopic neuroimaging signals including functional MRI, intracranial and stereotactic EEG, surface EEG and MEG for single subjects. Researchers from different backgrounds can benefit from an integrative software platform including a supporting framework for data management (generation, organization, storage, integration and sharing) and a simulation core written in Python.
   Workshop Format: • Lectures and hands-on tutorials • Participants are encouraged to bring their own data to work on
   Workshop Program Overview:
• Theoretical background of large scale brain network modeling  • Architecture of The Virtual Brain  • Interacting with TVB using GUI and Python CLI (hands-on) • Personalization pipeline (TVB-recon) • Modeling brain stimulation • Clinical applications of The Virtual Brain • Modeling epilepsy (hands-on) • Data fitting: theoretical background • Modeling resting state networks (hands-on) • Modeling brain stimulation and mouse brains • Mouse simulation (hands-on) • Modifying TVB code and implementing new features (hands-on) • Optional: bring your own data (optional)
   Please make sure to register early as we only offer limited seats to ensure there are enough tutors for you.
   REGISTRATION CLOSES APRIL 29th, 2019 
IMPORTANT TO NOTE:
*Anyone is welcome to register to TVB Node #8!* You DO NOT need to be registered for NeuroFrance 2019 in order to register for this workshop.  Registration for TVB Node #8 workshop is separate from registration to NeuroFrance 2019
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<H2 STYLE="text-align: center;"> </H2>
<H2>Prepare for the workshop</H2>
To get the most out of this workshop as an attendee, you might want to get a head-start by preparing your gear before you arrive:
1) <A HREF="http://thevirtualbrain.org/tvb/zwei/brainsimulator-software" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Download</A> and install the latest stable TVB package.
2) Test it in its current form to make sure it's compatible with your computing environment.
3) Familiarize yourself with the basics by browsing through the included manual. (once downloaded TVB, located at /TVB-Distribution/docs/UserManual.pdf)
4) If you are interested in modifying the code and contributing to TVB, also install the version control system Git.
In case of any technical problems with TVB installation, head over to the TVB mailing list, <A TITLE="TVB User Google Group" HREF="https://groups.google.com/forum/#!forum/tvb-users" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">https://groups.google.com/forum/#!forum/tvb-users </A>
<HR>
   
IMPORTANT DETAILS:
Equipment. Please bring your own laptops to work on, and follow the steps below to prepare your software environment.
Lodging. Participants are responsible for their accommodation. Following is a list of recommended hotels nearby the venue:
<UL>
<LI><A HREF="http://www.accorhotels.com/gb/hotel-1200-ibis-marseille-timone/index.shtml" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Ibis Marseille Timone</A> (650m)</LI>
<LI><A HREF="https://www.hotel-bb.com/en/hotels/marseille-timone.htm%20" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">B&B Hotel Marseille Centra La Timone</A> (500m)</LI>
<LI><A HREF="http://www.mamashelter.com/en/marseille/" TARGET="_blank" DATA-MSYS-CLICKTRACK="0" REL="nofollow noopener noreferrer">Mama Shelter</A> (1.3 km) </LI>
</UL>
<HR>
TVB Node#8 is proudly presented by THEVIRTUALBRAIN team.
<H2 STYLE="text-align: center;">  Your local host is <A TITLE="Email Organizer" HREF="mailto:lisa.otten@univ-amu.fr" TARGET="_blank" REL="nofollow noopener noreferrer">Lisa Otten</A>.</H2>
Contact <<A TITLE="Email Organizer" HREF="mailto:lisa.otten@univ-amu.fr" TARGET="_blank" REL="nofollow noopener noreferrer">lisa.otten@univ-amu.fr</A>> with any further questions.

Aix-Marseille Université - Faculté de Médecine Campus La Timone

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The Virtual Brain NODE#8 Workshop

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